Detailed information of SNP:
|
SNP ID:
sf0208229342(Gbrowse)
Chromosome: chr02 Position: 8229342 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 96.94% | 3.06% |
| All Indica | 792 | 97.10% | 2.90% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208229342 | T->C | LOC_Os02g14810(LOC_Os02g14810.1) | Synonymous |