Detailed information of SNP:
|
SNP ID:
sf0208253185(Gbrowse)
Chromosome: chr02 Position: 8253185 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 78.39% | 21.61% |
| All Indica | 797 | 72.27% | 27.73% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 62.20% | 37.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208253185 | A->C | INTERGENIC | None |