Detailed information of SNP:
|
SNP ID:
sf0208266409(Gbrowse)
Chromosome: chr02 Position: 8266409 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 69.88% | 30.12% |
| All Indica | 768 | 99.48% | 0.52% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 99.72% | 0.28% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 198 | 98.99% | 1.01% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208266409 | A->G | INTERGENIC | None |