Detailed information of SNP:
|
SNP ID:
sf0208267969(Gbrowse)
Chromosome: chr02 Position: 8267969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 50.18% | 49.82% |
| All Indica | 795 | 26.04% | 73.96% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 37.80% | 62.20% |
| Indica II | 213 | 3.76% | 96.24% |
| Indica Intermediate | 209 | 27.75% | 72.25% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208267969 | G->A | INTERGENIC | None |