Detailed information of SNP:
|
SNP ID:
sf0208279405(Gbrowse)
Chromosome: chr02 Position: 8279405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 65.86% | 34.14% |
| All Indica | 786 | 53.05% | 46.95% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 62.47% | 37.53% |
| Indica II | 206 | 31.55% | 68.45% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208279405 | C->T | INTERGENIC | None |