Detailed information of SNP:
|
SNP ID:
sf0208287624(Gbrowse)
Chromosome: chr02 Position: 8287624 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.47% | 34.53% |
| All Indica | 799 | 52.32% | 47.68% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208287624 | A->T | INTERGENIC | None |