Detailed information of SNP:
|
SNP ID:
sf0208320879(Gbrowse)
Chromosome: chr02 Position: 8320879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 97.10% | 2.90% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 390 | 90.51% | 9.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 87.94% | 12.06% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 50 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208320879 | G->A | INTERGENIC | None |