Detailed information of SNP:
|
SNP ID:
sf0208321254(Gbrowse)
Chromosome: chr02 Position: 8321254 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 66.74% | 33.26% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208321254 | C->T | INTERGENIC | None |