Detailed information of SNP:
|
SNP ID:
sf0208339462(Gbrowse)
Chromosome: chr02 Position: 8339462 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1271 | 95.99% | 4.01% |
| All Indica | 700 | 95.14% | 4.86% |
| All Japonica | 451 | 97.56% | 2.44% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 304 | 91.78% | 8.22% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 190 | 95.26% | 4.74% |
| Temperate Japonica | 326 | 98.47% | 1.53% |
| Tropical Japonica | 59 | 91.53% | 8.47% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208339462 | C->T | LOC_Os02g14929(LOC_Os02g14929.1) | INTRON |