Detailed information of SNP:
|
SNP ID:
sf0208350303(Gbrowse)
Chromosome: chr02 Position: 8350303 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 66.16% | 33.84% |
| All Indica | 775 | 52.13% | 47.87% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 357 | 60.78% | 39.22% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 206 | 55.83% | 44.17% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208350303 | C->A | INTERGENIC | None |