Detailed information of SNP:
|
SNP ID:
sf0208376373(Gbrowse)
Chromosome: chr02 Position: 8376373 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.20% | 48.80% |
| All Indica | 796 | 31.91% | 68.09% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 33.24% | 66.76% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208376373 | C->T | INTERGENIC | None |