Detailed information of SNP:
|
SNP ID:
sf0208396848(Gbrowse)
Chromosome: chr02 Position: 8396848 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.32% | 5.68% |
| All Indica | 790 | 91.90% | 8.10% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 87.10% | 12.90% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208396848 | C->A | LOC_Os02g15060(LOC_Os02g15060.1) | Non-Synonymous SNP |