Detailed information of SNP:
|
SNP ID:
sf0208424200(Gbrowse)
Chromosome: chr02 Position: 8424200 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1189 | 70.31% | 29.69% |
| All Indica | 620 | 59.84% | 40.16% |
| All Japonica | 453 | 98.68% | 1.32% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 250 | 61.20% | 38.80% |
| Indica II | 197 | 56.35% | 43.65% |
| Indica Intermediate | 173 | 61.85% | 38.15% |
| Temperate Japonica | 326 | 99.69% | 0.31% |
| Tropical Japonica | 61 | 95.08% | 4.92% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 45.71% | 54.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208424200 | T->A | INTERGENIC | None |