Detailed information of SNP:
|
SNP ID:
sf0208434102(Gbrowse)
Chromosome: chr02 Position: 8434102 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 84.92% | 15.08% |
| All Indica | 793 | 77.93% | 22.07% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 65.95% | 34.05% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208434102 | C->T | LOC_Os02g15140(LOC_Os02g15140.1) | INTRON |