Detailed information of SNP:
|
SNP ID:
sf0208439341(Gbrowse)
Chromosome: chr02 Position: 8439341 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.42% | 49.58% |
| All Indica | 797 | 26.60% | 73.40% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 34.58% | 65.42% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208439341 | A->G | INTERGENIC | None |