Detailed information of SNP:
|
SNP ID:
sf0208440051(Gbrowse)
Chromosome: chr02 Position: 8440051 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1262 | 80.27% | 19.73% |
| All Indica | 786 | 77.10% | 22.90% |
| All Japonica | 357 | 89.08% | 10.92% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 369 | 76.96% | 23.04% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 205 | 78.54% | 21.46% |
| Temperate Japonica | 228 | 87.72% | 12.28% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 52 | 78.85% | 21.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208440051 | G->A | INTERGENIC | None |