Detailed information of SNP:
|
SNP ID:
sf0208464516(Gbrowse)
Chromosome: chr02 Position: 8464516 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 83.99% | 16.01% |
| All Indica | 799 | 77.85% | 22.15% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208464516 | T->A | INTERGENIC | None |