Detailed information of SNP:
|
SNP ID:
sf0208480799(Gbrowse)
Chromosome: chr02 Position: 8480799 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 91.24% | 8.76% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208480799 | C->T | INTERGENIC | None |