Detailed information of SNP:
|
SNP ID:
sf0208482032(Gbrowse)
Chromosome: chr02 Position: 8482032 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.82% | 46.18% |
| All Indica | 796 | 78.39% | 21.61% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208482032 | T->A | INTERGENIC | None |