Detailed information of SNP:
|
SNP ID:
sf0208516942(Gbrowse)
Chromosome: chr02 Position: 8516942 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 82.36% | 17.64% |
| All Indica | 797 | 76.91% | 23.09% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208516942 | T->C | LOC_Os02g15250(LOC_Os02g15250.1) | Non-Synonymous SNP |