Detailed information of SNP:
|
SNP ID:
sf0208546298(Gbrowse)
Chromosome: chr02 Position: 8546298 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 93.95% | 6.05% |
| All Indica | 755 | 99.60% | 0.40% |
| All Japonica | 462 | 83.33% | 16.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 99.42% | 0.58% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 99.50% | 0.50% |
| Temperate Japonica | 314 | 80.57% | 19.43% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 61 | 81.97% | 18.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208546298 | G->A | INTERGENIC | None |