Detailed information of SNP:



SNP ID: sf0208546298(Gbrowse)

Chromosome: chr02

Position: 8546298
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1339 93.95% 6.05%
All Indica755 99.60% 0.40%
All Japonica462 83.33% 16.67%
Aus67 100.00% 0.00%
Indica I346 99.42% 0.58%
Indica II209 100.00% 0.00%
Indica Intermediate200 99.50% 0.50%
Temperate Japonica314 80.57% 19.43%
Tropical Japonica87 94.25% 5.75%
Japonica Intermediate61 81.97% 18.03%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0208546298 G->A INTERGENIC None