Detailed information of SNP:
|
SNP ID:
sf0208558887(Gbrowse)
Chromosome: chr02 Position: 8558887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 82.76% | 17.24% |
| All Indica | 796 | 73.37% | 26.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 71.66% | 28.34% |
| Indica II | 211 | 59.72% | 40.28% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208558887 | C->T | INTERGENIC | None |