Detailed information of SNP:
|
SNP ID:
sf0208593322(Gbrowse)
Chromosome: chr02 Position: 8593322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 84.91% | 15.09% |
| All Indica | 798 | 76.94% | 23.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208593322 | C->T | LOC_Os02g15350(LOC_Os02g15350.1) | INTRON |