Detailed information of SNP:
|
SNP ID:
sf0208594951(Gbrowse)
Chromosome: chr02 Position: 8594951 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.19% | 15.81% |
| All Indica | 797 | 76.16% | 23.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208594951 | C->T | INTERGENIC | None |