Detailed information of SNP:
|
SNP ID:
sf0208596572(Gbrowse)
Chromosome: chr02 Position: 8596572 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 84.54% | 15.46% |
| All Indica | 798 | 76.57% | 23.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208596572 | A->G | INTERGENIC | None |