Detailed information of SNP:
|
SNP ID:
sf0208607057(Gbrowse)
Chromosome: chr02 Position: 8607057 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 95.34% | 4.66% |
| All Indica | 761 | 92.64% | 7.36% |
| All Japonica | 477 | 99.79% | 0.21% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 354 | 88.70% | 11.30% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 200 | 94.50% | 5.50% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208607057 | C->T | INTERGENIC | None |