Detailed information of SNP:
|
SNP ID:
sf0208608993(Gbrowse)
Chromosome: chr02 Position: 8608993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 66.37% | 33.63% |
| All Indica | 726 | 43.53% | 56.47% |
| All Japonica | 490 | 98.57% | 1.43% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 332 | 44.88% | 55.12% |
| Indica II | 202 | 33.66% | 66.34% |
| Indica Intermediate | 192 | 51.56% | 48.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 95.45% | 4.55% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208608993 | C->T | INTERGENIC | None |