Detailed information of SNP:
|
SNP ID:
sf0208609023(Gbrowse)
Chromosome: chr02 Position: 8609023 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 77.34% | 22.66% |
| All Indica | 755 | 62.65% | 37.35% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 353 | 63.17% | 36.83% |
| Indica II | 203 | 52.22% | 47.78% |
| Indica Intermediate | 199 | 72.36% | 27.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208609023 | C->A | INTERGENIC | None |