Detailed information of SNP:
|
SNP ID:
sf0208618282(Gbrowse)
Chromosome: chr02 Position: 8618282 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 80.52% | 19.48% |
| All Indica | 767 | 74.97% | 25.03% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 362 | 85.64% | 14.36% |
| Indica II | 204 | 55.88% | 44.12% |
| Indica Intermediate | 201 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208618282 | C->T | INTERGENIC | None |