Detailed information of SNP:
|
SNP ID:
sf0208620449(Gbrowse)
Chromosome: chr02 Position: 8620449 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 52.94% | 47.06% |
| All Indica | 750 | 75.33% | 24.67% |
| All Japonica | 493 | 12.17% | 87.83% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 345 | 70.14% | 29.86% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 199 | 65.83% | 34.17% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208620449 | C->G | INTERGENIC | None |