Detailed information of SNP:
|
SNP ID:
sf0208626737(Gbrowse)
Chromosome: chr02 Position: 8626737 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 61.67% | 38.33% |
| All Indica | 712 | 45.51% | 54.49% |
| All Japonica | 475 | 92.63% | 7.37% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 328 | 45.73% | 54.27% |
| Indica II | 192 | 33.85% | 66.15% |
| Indica Intermediate | 192 | 56.77% | 43.23% |
| Temperate Japonica | 326 | 97.85% | 2.15% |
| Tropical Japonica | 86 | 81.40% | 18.60% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208626737 | T->C | LOC_Os02g15420(LOC_Os02g15420.1) | INTRON |