Detailed information of SNP:
|
SNP ID:
sf0208628362(Gbrowse)
Chromosome: chr02 Position: 8628362 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 56.07% | 43.93% |
| All Indica | 778 | 78.79% | 21.21% |
| All Japonica | 495 | 14.55% | 85.45% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 79.12% | 20.88% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 334 | 6.29% | 93.71% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208628362 | T->C | LOC_Os02g15420(LOC_Os02g15420.1) | Synonymous |