Detailed information of SNP:
|
SNP ID:
sf0208637780(Gbrowse)
Chromosome: chr02 Position: 8637780 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 80.29% | 19.71% |
| All Indica | 785 | 75.16% | 24.84% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 372 | 84.41% | 15.59% |
| Indica II | 206 | 59.71% | 40.29% |
| Indica Intermediate | 207 | 73.91% | 26.09% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208637780 | G->T | INTERGENIC | None |