Detailed information of SNP:
|
SNP ID:
sf0208678242(Gbrowse)
Chromosome: chr02 Position: 8678242 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 85.90% | 14.10% |
| All Indica | 787 | 79.03% | 20.97% |
| All Japonica | 494 | 97.17% | 2.83% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 369 | 79.40% | 20.60% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208678242 | C->A | INTERGENIC | None |