Detailed information of SNP:
|
SNP ID:
sf0208687923(Gbrowse)
Chromosome: chr02 Position: 8687923 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 97.91% | 2.09% |
| All Indica | 746 | 97.05% | 2.95% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 52 | 88.46% | 11.54% |
| Indica I | 362 | 98.62% | 1.38% |
| Indica II | 181 | 96.69% | 3.31% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 33 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208687923 | C->T | INTERGENIC | None |