Detailed information of SNP:
|
SNP ID:
sf0208705087(Gbrowse)
Chromosome: chr02 Position: 8705087 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 94.40% | 5.60% |
| All Indica | 773 | 90.69% | 9.31% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 87.71% | 12.29% |
| Indica II | 207 | 88.89% | 11.11% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208705087 | G->A | INTERGENIC | None |