Detailed information of SNP:
|
SNP ID:
sf0208715393(Gbrowse)
Chromosome: chr02 Position: 8715393 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 87.56% | 12.44% |
| All Indica | 780 | 84.62% | 15.38% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 363 | 84.57% | 15.43% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208715393 | C->T | INTERGENIC | None |