Detailed information of SNP:
|
SNP ID:
sf0208726202(Gbrowse)
Chromosome: chr02 Position: 8726202 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.83% | 48.17% |
| All Indica | 798 | 25.69% | 74.31% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 28.88% | 71.12% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208726202 | C->A | INTERGENIC | None |