Detailed information of SNP:
|
SNP ID:
sf0208731145(Gbrowse)
Chromosome: chr02 Position: 8731145 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.42% | 8.58% |
| All Indica | 797 | 94.23% | 5.77% |
| All Japonica | 491 | 86.76% | 13.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 331 | 84.59% | 15.41% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208731145 | G->A | INTERGENIC | None |