Detailed information of SNP:
|
SNP ID:
sf0208735761(Gbrowse)
Chromosome: chr02 Position: 8735761 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 54.15% | 45.85% |
| All Indica | 792 | 29.04% | 70.96% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 373 | 32.98% | 67.02% |
| Indica II | 208 | 19.71% | 80.29% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208735761 | G->A | LOC_Os02g15560(LOC_Os02g15560.1) | Synonymous |