Detailed information of SNP:
|
SNP ID:
sf0208736543(Gbrowse)
Chromosome: chr02 Position: 8736543 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.67% | 49.33% |
| All Indica | 799 | 23.53% | 76.47% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208736543 | T->C | LOC_Os02g15560(LOC_Os02g15560.1) | Non-Synonymous SNP |