Detailed information of SNP:
|
SNP ID:
sf0208739948(Gbrowse)
Chromosome: chr02 Position: 8739948 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 24.28% | 75.72% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208739948 | G->C | INTERGENIC | None |