Detailed information of SNP:
|
SNP ID:
sf0208744093(Gbrowse)
Chromosome: chr02 Position: 8744093 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 24.03% | 75.97% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208744093 | T->C | INTERGENIC | None |