Detailed information of SNP:
|
SNP ID:
sf0208756842(Gbrowse)
Chromosome: chr02 Position: 8756842 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.39% | 46.61% |
| All Indica | 799 | 76.60% | 23.40% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208756842 | T->A | INTERGENIC | None |