Detailed information of SNP:
|
SNP ID:
sf0208783530(Gbrowse)
Chromosome: chr02 Position: 8783530 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.46% | 35.54% |
| All Indica | 798 | 40.48% | 59.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208783530 | G->A | INTERGENIC | None |