Detailed information of SNP:
|
SNP ID:
sf0208783823(Gbrowse)
Chromosome: chr02 Position: 8783823 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 55.78% | 44.22% |
| All Indica | 791 | 88.37% | 11.63% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 209 | 70.81% | 29.19% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208783823 | T->C | INTERGENIC | None |