Detailed information of SNP:
|
SNP ID:
sf0208784666(Gbrowse)
Chromosome: chr02 Position: 8784666 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.44% | 19.56% |
| All Indica | 797 | 72.40% | 27.60% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 68.45% | 31.55% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208784666 | G->A | LOC_Os02g15630(LOC_Os02g15630.1) | INTRON |