Detailed information of SNP:
|
SNP ID:
sf0208822630(Gbrowse)
Chromosome: chr02 Position: 8822630 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 55.11% | 44.89% |
| All Indica | 790 | 87.22% | 12.78% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 210 | 67.14% | 32.86% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208822630 | A->G | INTERGENIC | None |