Detailed information of SNP:
|
SNP ID:
sf0208828018(Gbrowse)
Chromosome: chr02 Position: 8828018 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 92.99% | 7.01% |
| All Indica | 696 | 87.36% | 12.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 310 | 84.19% | 15.81% |
| Indica II | 187 | 84.49% | 15.51% |
| Indica Intermediate | 199 | 94.97% | 5.03% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208828018 | C->T | INTERGENIC | None |