Detailed information of SNP:
|
SNP ID:
sf0208849035(Gbrowse)
Chromosome: chr02 Position: 8849035 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 50.18% | 49.82% |
| All Indica | 793 | 78.31% | 21.69% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 89.22% | 10.78% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0208849035 | C->T | INTERGENIC | None |